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Fortran Dependency Map

This page is generated by tools/generate_fortran_dependency_report.py. Entity summaries are copied from Fortran source comments.

Overview

Source files: 125
Modules: 84
Submodules: 40
Programs: 3
Internal dependency edges: 477

Overall Graph

Fortran module dependency graph

Solid edges are use dependencies. Dashed edges are parent references from submodule(parent).

Summary by Directory

Directory	Entities	Internal dependencies
`app`	3	21
`src/config`	9	26
`src/config/app_config_parser`	10	23
`src/core`	7	5
`src/mesh`	3	11
`src/mesh/panel`	3	7
`src/particles`	2	7
`src/particles/injection`	5	22
`src/physics`	5	13
`src/physics/field_solver`	8	35
`src/physics/field_solver/fmm/api`	4	8
`src/physics/field_solver/fmm/internal/common`	2	5
`src/physics/field_solver/fmm/internal/periodic`	5	19
`src/physics/field_solver/fmm/internal/runtime`	2	14
`src/physics/field_solver/fmm/internal/tree`	2	12
`src/physics/field_solver/panel`	3	10
`src/physics/field_solver/periodic`	5	17
`src/physics/sheath`	2	2
`src/physics/sheath/zhao`	5	11
`src/runtime`	15	69
`src/runtime/configuration`	7	38
`src/runtime/coupling`	1	1
`src/runtime/sheath`	5	34
`src/runtime/sheath/table`	3	7
`src/runtime/simulator`	8	41
`src/tools/sheath`	3	19

Most Depended-on Modules

Entity	kind	Incoming dependencies
`bem_kinds`	`module`	82
`bem_types`	`module`	36
`bem_string_utils`	`module`	35
`bem_constants`	`module`	24
`bem_app_config_types`	`module`	20
`bem_mpi`	`module`	17
`bem_panel_geometry`	`module`	13
`bem_charge_ledger`	`module`	11
`bem_app_config_parser`	`module`	10
`bem_electrostatic_snapshot`	`module`	10

Entity List

Entity	kind	Path	Internal dependencies	Source summary
`main`	`program`	`app/main.f90`	`bem_kinds`, `bem_version`, `bem_types`, `bem_mpi`, `bem_performance_profile`, `bem_simulator`, `bem_restart`, `bem_periodic_checkpoint`, `bem_checkpoint_contract`, `bem_output_writer`, `bem_app_config`, `bem_mesh`, `bem_charge_ledger`, `bem_electrostatic_snapshot`, `bem_matching_plane_response_provider`	設定読込・メッシュ生成・粒子初期化・シミュレーション実行・結果出力を順に行うCLIエントリーポイント。
`zhao_atlas_main`	`program`	`app/zhao_atlas_main.f90`	`bem_kinds`, `bem_app_config`, `bem_matching_plane_zhao_atlas`	Zhao A/B/C solvability atlasを生成するCLI。
`zhao_response_main`	`program`	`app/zhao_response_main.f90`	`bem_kinds`, `bem_app_config`, `bem_matching_plane_response_generator`	Zhao online evaluatorからmatching-plane response tableを生成するCLI。
`bem_app_config_authoring`	`module`	`src/config/bem_app_config_authoring.f90`	`bem_kinds`, `bem_app_config_types`, `bem_app_config_authoring_types`	Authoring overlay の公開入口。配列管理と領域別変換の入口を持つ。
`bem_app_config_authoring_types`	`module`	`src/config/bem_app_config_authoring_types.f90`	`bem_kinds`, `bem_app_config_types`	TOML authoring overlay の型と default。実行時設定への変換処理は持たない。
`bem_app_config_types`	`module`	`src/config/bem_app_config_types.f90`	`bem_kinds`, `bem_types`, `bem_physics_config_types`	アプリ設定の型定義と、設定由来の粒子数計算をまとめるモジュール。
`bem_config_helpers`	`module`	`src/config/bem_config_helpers.f90`	`bem_kinds`, `bem_types`, `bem_app_config_types`, `bem_string_utils`	設定型のヘルパー関数。パーサに依存せず下位層から利用可能。
`bem_config_toml`	`module`	`src/config/bem_config_toml.f90`	`bem_kinds`, `bem_types`, `bem_app_config_types`, `bem_string_utils`	TOML の基本型・固定長文字列・配列を検査して読み込む共通入口。
`bem_physics_config_types`	`module`	`src/config/bem_physics_config_types.f90`	`bem_kinds`, `bem_types`, `bem_string_utils`	場・periodic2・panel の型付き設定と旧 `[sim]` 設定の正規化を定義する。
`bem_app_config_authoring_domain`	`submodule`	`src/config/bem_app_config_authoring_domain.f90`	`bem_app_config_authoring`, `bem_types`, `bem_string_utils`	計算領域、境界、reservoir 設定の正規化と box の幾何条件。
`bem_app_config_authoring_geometry`	`submodule`	`src/config/bem_app_config_authoring_geometry.f90`	`bem_app_config_authoring`, `bem_string_utils`	Mesh template の group、anchor、相対サイズを実座標・実寸へ変換する。
`bem_app_config_authoring_sources`	`submodule`	`src/config/bem_app_config_authoring_sources.f90`	`bem_app_config_authoring`, `bem_string_utils`	粒子源の face_fraction 入力を注入面上の実座標へ変換する。
`bem_app_config_parser`	`module`	`src/config/app_config_parser/bem_app_config_parser.f90`	`bem_kinds`, `bem_types`, `bem_app_config_types`, `bem_physics_config_types`, `bem_app_config_authoring`, `bem_string_utils`, `bem_config_toml`, `bem_injection_flux`, `bem_injection_geometry`	TOML設定ファイルを `toml-f` で読み込み、`app_config` へ反映する。
`bem_app_config_parser_finalize`	`submodule`	`src/config/app_config_parser/bem_app_config_parser_finalize.f90`	`bem_app_config_parser`	設定の正規化と領域別 preflight の実行順を管理する。
`bem_app_config_parser_preflight_particles`	`submodule`	`src/config/app_config_parser/bem_app_config_parser_preflight_particles.f90`	`bem_app_config_parser`, `bem_app_config_types`	lint 済みの粒子種識別子と有効な粒子源の派生量を確定する。
`bem_app_config_parser_preflight_sim`	`submodule`	`src/config/app_config_parser/bem_app_config_parser_preflight_sim.f90`	`bem_app_config_parser`	lint 済み設定の基本的な計算条件を確認し、時間と外部場を確定する。
`bem_app_config_parser_preflight_surface`	`submodule`	`src/config/app_config_parser/bem_app_config_parser_preflight_surface.f90`	`bem_app_config_parser`, `bem_constants`, `bem_config_helpers`, `bem_app_config_types`	lint 済みの表面電流設定について、種の参照と物理モデルの成立条件を検査する。
`bem_app_config_parser_read_mesh`	`submodule`	`src/config/app_config_parser/bem_app_config_parser_read_mesh.f90`	`bem_app_config_parser`	メッシュの TOML 読み取りと、モード・表面モデルの preflight。
`bem_app_config_parser_read_particles`	`submodule`	`src/config/app_config_parser/bem_app_config_parser_read_particles.f90`	`bem_app_config_parser`	領域別の TOML 読み取り。意味検証と派生値の確定は preflight が担当する。
`bem_app_config_parser_read_sim`	`submodule`	`src/config/app_config_parser/bem_app_config_parser_read_sim.f90`	`bem_app_config_parser`	領域別の TOML 読み取り。意味検証と派生値の確定は preflight が担当する。
`bem_app_config_parser_read_surface`	`submodule`	`src/config/app_config_parser/bem_app_config_parser_read_surface.f90`	`bem_app_config_parser`	領域別の TOML 読み取り。意味検証と派生値の確定は preflight が担当する。
`bem_app_config_parser_validate`	`submodule`	`src/config/app_config_parser/bem_app_config_parser_validate.f90`	`bem_app_config_parser`, `bem_config_helpers`	lint 済みの設定から電場・流束・粒子重みを導出し、計算結果を検査する。
`bem_constants`	`module`	`src/core/bem_constants.f90`	`bem_kinds`	シミュレーションで使用する物理定数を定義する。
`bem_external_boundary_contract`	`module`	`src/core/bem_external_boundary_contract.f90`	`bem_kinds`, `bem_string_utils`	局所 reservoir 流入と通常 open 面の処理を実行時契約へ正規化する。
`bem_kinds`	`module`	`src/core/bem_kinds.f90`	-	倍精度実数と32bit整数のkind定義を集約する基盤モジュール。
`bem_mpi`	`module`	`src/core/bem_mpi.F90`	`bem_kinds`	MPIの初期化・集約を抽象化し、非MPIビルドでは単一ランク動作へフォールバックする。
`bem_string_utils`	`module`	`src/core/bem_string_utils.f90`	-	ASCII 文字列操作ユーティリティ。
`bem_types`	`module`	`src/core/bem_types.f90`	`bem_kinds`	シミュレーション設定・統計・メッシュ・粒子・衝突情報の主要データ型を定義する。
`bem_version`	`module`	`src/core/bem_version.F90`	-	BEACH build metadata stamped by build.sh.
`bem_importers`	`module`	`src/mesh/bem_importers.f90`	`bem_kinds`, `bem_types`, `bem_mesh`	OBJメッシュを走査・解析し、内部 `mesh_type` へ変換するインポートモジュール。
`bem_mesh`	`module`	`src/mesh/bem_mesh.f90`	`bem_kinds`, `bem_types`, `bem_string_utils`, `bem_panel_geometry`, `bem_triangle_quadrature`	三角形メッシュ幾何量(重心・法線・AABB・代表長)を前計算して保持するモジュール。
`bem_templates`	`module`	`src/mesh/bem_templates.f90`	`bem_kinds`, `bem_types`, `bem_mesh`	平面/穴あき平面/円板/リング/箱/円柱/球テンプレートから三角形メッシュを生成するユーティリティ。
`bem_panel_geometry`	`module`	`src/mesh/panel/bem_panel_geometry.f90`	`bem_kinds`	Ordered triangle geometry and exact Cartesian surface moments.
`bem_panel_surface_sides`	`module`	`src/mesh/panel/bem_panel_surface_sides.f90`	`bem_kinds`, `bem_types`, `bem_string_utils`	Resolve physical vacuum sides without changing ordered triangle winding.
`bem_triangle_quadrature`	`module`	`src/mesh/panel/bem_triangle_quadrature.f90`	`bem_kinds`, `bem_constants`, `bem_panel_geometry`	Triangle cubature rules and Gauss-Duffy quadrature plans.
`bem_injection`	`module`	`src/particles/bem_injection.f90`	`bem_injection_random`, `bem_injection_geometry`, `bem_injection_flux`, `bem_injection_velocity_grid`, `bem_photoelectron_injection`	粒子注入APIを責務別internal moduleから再公開する互換facade。
`bem_particles`	`module`	`src/particles/bem_particles.f90`	`bem_kinds`, `bem_types`	粒子SoAデータ構造の初期化を提供するモジュール。
`bem_injection_flux`	`module`	`src/particles/injection/bem_injection_flux.f90`	`bem_kinds`, `bem_constants`, `bem_injection_geometry`, `bem_injection_random`	Maxwell reservoirの流束、macro粒子数、面速度sampling。
`bem_injection_geometry`	`module`	`src/particles/injection/bem_injection_geometry.f90`	`bem_kinds`, `bem_string_utils`	box面注入で共有する面軸と開口geometryの解決。
`bem_injection_random`	`module`	`src/particles/injection/bem_injection_random.f90`	`bem_kinds`, `bem_constants`, `bem_particles`, `bem_types`	粒子注入で共有する乱数初期化と基本分布sampling。
`bem_injection_velocity_grid`	`module`	`src/particles/injection/bem_injection_velocity_grid.f90`	`bem_kinds`, `bem_string_utils`, `bem_injection_geometry`	CSV速度grid reservoirの読込、補間、sampling。
`bem_photoelectron_injection`	`module`	`src/particles/injection/bem_photoelectron_injection.f90`	`bem_kinds`, `bem_constants`, `bem_types`, `bem_boundary`, `bem_collision`, `bem_string_utils`, `bem_injection_flux`, `bem_injection_geometry`, `bem_injection_random`	光線追跡による光電子放出位置と速度のsampling。
`bem_boundary`	`module`	`src/physics/bem_boundary.f90`	`bem_kinds`, `bem_types`	シミュレーションボックス境界（流出/反射/面内再配置反射/周期）を適用するモジュール。
`bem_collision`	`module`	`src/physics/bem_collision.f90`	`bem_kinds`, `bem_types`, `bem_string_utils`	粒子軌道セグメントと三角形要素の交差判定を提供する衝突検出モジュール。
`bem_pusher`	`module`	`src/physics/bem_pusher.f90`	`bem_kinds`	荷電粒子の時間発展にBoris法を適用する運動方程式ソルバ。
`bem_surface_models`	`module`	`src/physics/bem_surface_models.f90`	`bem_kinds`, `bem_types`, `bem_string_utils`	表面モデルごとの電荷更新後処理を扱うモジュール。
`bem_surface_models_conductor`	`submodule`	`src/physics/bem_surface_models_conductor.f90`	`bem_surface_models`, `bem_constants`, `bem_panel_geometry`, `bem_panel_kernel`	`bem_surface_models` の浮遊導体電荷再配分を実装する submodule。
`bem_electrostatic_snapshot`	`module`	`src/physics/field_solver/bem_electrostatic_snapshot.f90`	`bem_kinds`, `bem_constants`, `bem_types`, `bem_field_solver`, `bem_physics_config_types`, `bem_string_utils`, `bem_periodic_zero_mode_plan`, `bem_periodic_zero_mode_eval`, `bem_coulomb_fmm_periodic_nonzero_reference`, `bem_coulomb_fmm_periodic_nonzero_upper_vacuum`, `bem_panel_geometry`, `bem_panel_kernel`	1バッチ内で固定する静電場 snapshot。
`bem_field_kernel_c`	`module`	`src/physics/field_solver/bem_field_kernel_c.f90`	`bem_constants`, `bem_coulomb_fmm_core`, `bem_kinds`, `bem_panel_geometry`, `bem_version`	C ABI wrapper for the simulator-independent Coulomb FMM field kernel.
`bem_field_solver`	`module`	`src/physics/field_solver/bem_field_solver.f90`	`bem_kinds`, `bem_constants`, `bem_types`, `bem_coulomb_fmm_core`, `bem_string_utils`, `bem_physics_config_types`	粒子位置での電場評価を direct / treecode / fmm で切り替える場ソルバ。
`bem_electrostatic_snapshot_eval`	`submodule`	`src/physics/field_solver/bem_electrostatic_snapshot_eval.f90`	`bem_electrostatic_snapshot`, `bem_coulomb_fmm_periodic_nonzero_upper_vacuum`	`bem_electrostatic_snapshot` の局所電場・電位評価を実装する submodule。
`bem_field_solver_config`	`submodule`	`src/physics/field_solver/bem_field_solver_config.f90`	`bem_field_solver`, `bem_coulomb_fmm_core`, `bem_physics_config_types`	`bem_field_solver` の初期化・設定補助手続きを実装する submodule。
`bem_field_solver_eval`	`submodule`	`src/physics/field_solver/bem_field_solver_eval.f90`	`bem_field_solver`, `bem_coulomb_fmm_core`, `bem_panel_geometry`, `bem_panel_kernel`	`bem_field_solver` の電場評価と木走査ロジックを実装する submodule。
`bem_field_solver_fmm`	`submodule`	`src/physics/field_solver/bem_field_solver_fmm.f90`	`bem_field_solver`, `bem_coulomb_fmm_core`	`bem_field_solver` と FMM core の間のパネル幾何・電荷状態の更新を担う。
`bem_field_solver_tree`	`submodule`	`src/physics/field_solver/bem_field_solver_tree.f90`	`bem_field_solver`	`bem_field_solver` の octree 構築・更新とメモリ管理を実装する submodule。
`bem_coulomb_fmm_core`	`module`	`src/physics/field_solver/fmm/api/bem_coulomb_fmm_core.f90`	`bem_kinds`, `bem_coulomb_fmm_types`	`mesh_type` や `sim_config` に依存しない Coulomb FMM コア API。
`bem_coulomb_fmm_core_build`	`submodule`	`src/physics/field_solver/fmm/api/bem_coulomb_fmm_core_build.f90`	`bem_coulomb_fmm_core`, `bem_coulomb_fmm_plan_ops`	`bem_coulomb_fmm_core` の plan 構築 API ラッパ。
`bem_coulomb_fmm_core_eval`	`submodule`	`src/physics/field_solver/fmm/api/bem_coulomb_fmm_core_eval.f90`	`bem_coulomb_fmm_core`, `bem_coulomb_fmm_eval_ops`	`bem_coulomb_fmm_core` の評価 API ラッパ。
`bem_coulomb_fmm_core_state`	`submodule`	`src/physics/field_solver/fmm/api/bem_coulomb_fmm_core_state.f90`	`bem_coulomb_fmm_core`, `bem_coulomb_fmm_state_ops`	`bem_coulomb_fmm_core` の state 更新 API ラッパ。
`bem_coulomb_fmm_basis`	`module`	`src/physics/field_solver/fmm/internal/common/bem_coulomb_fmm_basis.f90`	`bem_kinds`, `bem_coulomb_fmm_types`	Coulomb FMM の multi-index と微分テーブル計算。
`bem_coulomb_fmm_types`	`module`	`src/physics/field_solver/fmm/internal/common/bem_coulomb_fmm_types.f90`	`bem_kinds`, `bem_panel_geometry`, `bem_periodic_zero_mode_plan`	Coulomb FMM コアで共有する型定義。
`bem_coulomb_fmm_periodic`	`module`	`src/physics/field_solver/fmm/internal/periodic/bem_coulomb_fmm_periodic.f90`	`bem_kinds`, `bem_coulomb_fmm_types`	Coulomb FMM の periodic2 境界処理。
`bem_coulomb_fmm_periodic_cache`	`module`	`src/physics/field_solver/fmm/internal/periodic/bem_coulomb_fmm_periodic_cache.f90`	`bem_filesystem`, `bem_kinds`	Versioned stream codec for cached periodic root operators.
`bem_coulomb_fmm_periodic_ewald`	`module`	`src/physics/field_solver/fmm/internal/periodic/bem_coulomb_fmm_periodic_ewald.f90`	`bem_kinds`, `bem_coulomb_fmm_types`, `bem_coulomb_fmm_periodic`	periodic2 cached operator生成用のEwald teacher。
`bem_coulomb_fmm_periodic_root_ops`	`module`	`src/physics/field_solver/fmm/internal/periodic/bem_coulomb_fmm_periodic_root_ops.f90`	`bem_version`, `bem_kinds`, `bem_mpi`, `bem_filesystem`, `bem_coulomb_fmm_types`, `bem_coulomb_fmm_basis`, `bem_coulomb_fmm_periodic`, `bem_coulomb_fmm_periodic_ewald`, `bem_coulomb_fmm_periodic_cache`, `bem_regularized_qr`, `bem_coulomb_fmm_tree_utils`	periodic2 root operator の前計算。
`bem_regularized_qr`	`module`	`src/physics/field_solver/fmm/internal/periodic/bem_regularized_qr.f90`	`bem_kinds`	Reusable column-scaled QR factorization for ridge-regularized least squares.
`bem_coulomb_fmm_eval_ops`	`module`	`src/physics/field_solver/fmm/internal/runtime/bem_coulomb_fmm_eval_ops.f90`	`bem_kinds`, `bem_constants`, `bem_panel_geometry`, `bem_panel_kernel`, `bem_coulomb_fmm_types`, `bem_coulomb_fmm_basis`, `bem_coulomb_fmm_periodic`, `bem_coulomb_fmm_tree_utils`, `bem_periodic_zero_mode_eval`	Coulomb FMM 電場評価。
`bem_coulomb_fmm_state_ops`	`module`	`src/physics/field_solver/fmm/internal/runtime/bem_coulomb_fmm_state_ops.f90`	`bem_kinds`, `bem_constants`, `bem_coulomb_fmm_types`, `bem_coulomb_fmm_tree_utils`, `bem_periodic_zero_mode_plan`	Coulomb FMM state 更新と upward/downward pass。
`bem_coulomb_fmm_plan_ops`	`module`	`src/physics/field_solver/fmm/internal/tree/bem_coulomb_fmm_plan_ops.f90`	`bem_kinds`, `bem_coulomb_fmm_types`, `bem_coulomb_fmm_basis`, `bem_coulomb_fmm_periodic`, `bem_coulomb_fmm_periodic_ewald`, `bem_coulomb_fmm_periodic_root_ops`, `bem_panel_geometry`, `bem_periodic_zero_mode_plan`, `bem_coulomb_fmm_tree_utils`	Coulomb FMM plan 構築と tree トポロジ前計算。
`bem_coulomb_fmm_tree_utils`	`module`	`src/physics/field_solver/fmm/internal/tree/bem_coulomb_fmm_tree_utils.f90`	`bem_kinds`, `bem_coulomb_fmm_types`, `bem_coulomb_fmm_periodic`	Coulomb FMM tree 構造の共通ユーティリティ。
`bem_panel_kernel`	`module`	`src/physics/field_solver/panel/bem_panel_kernel.f90`	`bem_kinds`, `bem_constants`, `bem_panel_geometry`, `bem_panel_self_terms`	Analytic free-space P0 triangle potential, field, principal value, and jump.
`bem_panel_quadrature`	`module`	`src/physics/field_solver/panel/bem_panel_quadrature.f90`	`bem_kinds`, `bem_constants`, `bem_panel_geometry`, `bem_triangle_quadrature`	Independent Coulomb potential/field correctness oracles for triangle panels.
`bem_panel_self_terms`	`module`	`src/physics/field_solver/panel/bem_panel_self_terms.f90`	`bem_kinds`, `bem_panel_geometry`	On-surface P0 triangle potential and principal-value field integrals.
`bem_coulomb_fmm_periodic_nonzero_reference`	`module`	`src/physics/field_solver/periodic/bem_coulomb_fmm_periodic_nonzero_reference.f90`	`bem_kinds`, `bem_constants`, `bem_types`, `bem_panel_geometry`, `bem_triangle_quadrature`	-
`bem_coulomb_fmm_periodic_nonzero_upper_vacuum`	`module`	`src/physics/field_solver/periodic/bem_coulomb_fmm_periodic_nonzero_upper_vacuum.f90`	`bem_kinds`, `bem_constants`, `bem_types`	上部真空領域で周期 k/=0 panel Fourier 和をsource/target因子へ分離する。
`bem_periodic_zero_mode_c`	`module`	`src/physics/field_solver/periodic/bem_periodic_zero_mode_c.f90`	`bem_kinds`, `bem_periodic_zero_mode_eval`, `bem_periodic_zero_mode_plan`	C ABI wrapper for the physical periodic zero mode.
`bem_periodic_zero_mode_eval`	`module`	`src/physics/field_solver/periodic/bem_periodic_zero_mode_eval.f90`	`bem_kinds`, `bem_constants`, `bem_periodic_zero_mode_plan`	-
`bem_periodic_zero_mode_plan`	`module`	`src/physics/field_solver/periodic/bem_periodic_zero_mode_plan.f90`	`bem_kinds`, `bem_constants`, `bem_types`	-
`bem_matching_plane_contract`	`module`	`src/physics/sheath/bem_matching_plane_contract.f90`	`bem_kinds`	Matching-plane 応答の 5 入力・6 出力の並び。モデル、CSV、MPI の実装には依存しない。
`bem_surface_closure_contract`	`module`	`src/physics/sheath/bem_surface_closure_contract.f90`	`bem_kinds`	シミュレータが外部の表面電流モデルから受け取るモデル非依存の境界契約。
`bem_matching_plane_zhao`	`module`	`src/physics/sheath/zhao/bem_matching_plane_zhao.f90`	`bem_kinds`, `bem_constants`, `bem_matching_plane_contract`, `bem_sheath_model_core`, `bem_string_utils`	-
`bem_sheath_model_core`	`module`	`src/physics/sheath/zhao/bem_sheath_model_core.f90`	`bem_kinds`, `bem_constants`	Zhao 系シース数値モデルの core 実装。
`bem_matching_plane_zhao_numerics`	`submodule`	`src/physics/sheath/zhao/bem_matching_plane_zhao_numerics.f90`	`bem_matching_plane_zhao`	-
`bem_matching_plane_zhao_physics`	`submodule`	`src/physics/sheath/zhao/bem_matching_plane_zhao_physics.f90`	`bem_matching_plane_zhao`, `bem_sheath_model_core`	-
`bem_matching_plane_zhao_roots`	`submodule`	`src/physics/sheath/zhao/bem_matching_plane_zhao_roots.f90`	`bem_matching_plane_zhao`	-
`bem_checkpoint_contract`	`module`	`src/runtime/bem_checkpoint_contract.f90`	`bem_kinds`, `bem_filesystem`	BEACH checkpoint metadata and transactional publication shared by output and restart code.
`bem_filesystem`	`module`	`src/runtime/bem_filesystem.f90`	-	Minimal POSIX filesystem operations used by the runtime.
`bem_mesh_identity`	`module`	`src/runtime/bem_mesh_identity.f90`	`bem_kinds`, `bem_types`	Ordered mesh identity for mapping saved element charges.
`bem_output_writer`	`module`	`src/runtime/bem_output_writer.f90`	`bem_kinds`, `bem_types`, `bem_app_config_types`, `bem_charge_ledger`, `bem_checkpoint_contract`, `bem_electrostatic_snapshot`, `bem_filesystem`	実行サマリ・最終CSV・履歴CSVの出力を担当するモジュール。
`bem_performance_profile`	`module`	`src/runtime/bem_performance_profile.f90`	`bem_kinds`, `bem_mpi`, `bem_string_utils`	実行フェーズごとの壁時計計測と MPI 集約出力を担う軽量プロファイラ。
`bem_periodic_checkpoint`	`module`	`src/runtime/bem_periodic_checkpoint.f90`	`bem_kinds`, `bem_types`, `bem_app_config_types`, `bem_charge_ledger`, `bem_checkpoint_contract`, `bem_filesystem`, `bem_mpi`, `bem_output_writer`, `bem_restart`	accepted batch 境界で二重化した定期チェックポイントを保存・解決する。
`bem_restart`	`module`	`src/runtime/bem_restart.f90`	`bem_kinds`, `bem_types`, `bem_app_config_types`, `bem_charge_ledger`, `bem_checkpoint_contract`, `bem_mpi`	チェックポイントファイルの保存/復元を扱う補助モジュール。
`integer`	`module`	`src/runtime/bem_output_writer.f90`	`bem_kinds`, `bem_types`, `bem_app_config_types`, `bem_charge_ledger`, `bem_checkpoint_contract`, `bem_electrostatic_snapshot`, `bem_filesystem`	-
`pure`	`module`	`src/runtime/bem_output_writer.f90`	`bem_kinds`, `bem_types`, `bem_app_config_types`, `bem_charge_ledger`, `bem_checkpoint_contract`, `bem_electrostatic_snapshot`, `bem_filesystem`	-
`bem_output_writer_files`	`submodule`	`src/runtime/bem_output_writer_files.f90`	`bem_output_writer`, `bem_types`, `bem_string_utils`	メッシュ・電荷・電位・台帳のCSV出力。
`bem_output_writer_history`	`submodule`	`src/runtime/bem_output_writer_history.f90`	`bem_output_writer`, `bem_string_utils`	履歴ファイルの生成・再開とスナップショットの出力。
`bem_output_writer_summary`	`submodule`	`src/runtime/bem_output_writer_summary.f90`	`bem_output_writer`, `bem_types`, `bem_charge_ledger`, `bem_checkpoint_contract`, `bem_field_solver`, `bem_external_boundary_contract`, `bem_mesh_identity`, `bem_physics_config_types`, `bem_surface_current_model`, `bem_version`, `bem_string_utils`	実行サマリと再構築用メタデータの出力。
`bem_restart_contract`	`submodule`	`src/runtime/bem_restart_contract.f90`	`bem_restart`, `bem_mesh_identity`, `bem_physics_config_types`, `bem_checkpoint_contract`	再開時のスキーマ・メッシュ整合性の検証。
`bem_restart_injection`	`submodule`	`src/runtime/bem_restart_injection.f90`	`bem_restart`, `bem_kinds`, `bem_mpi`	再開に必要な乱数状態・マクロ粒子端数の保存と復元。
`bem_restart_records`	`submodule`	`src/runtime/bem_restart_records.f90`	`bem_restart`, `bem_kinds`, `bem_string_utils`	チェックポイントの統計・電荷・台帳の読み込みと形式検証。
`bem_app_config`	`module`	`src/runtime/configuration/bem_app_config.f90`	`bem_app_config_types`, `bem_physics_config_types`, `bem_app_config_parser`, `bem_string_utils`, `bem_app_config_runtime`	設定型・TOMLパーサ・実行時変換ロジックを束ねる後方互換ファサード。
`bem_app_config_mesh_runtime`	`module`	`src/runtime/configuration/bem_app_config_mesh_runtime.f90`	`bem_kinds`, `bem_types`, `bem_templates`, `bem_mesh`, `bem_panel_surface_sides`, `bem_importers`, `bem_app_config_types`, `bem_string_utils`	app_config から三角形メッシュを構築する実行時変換。
`bem_app_config_particle_runtime`	`module`	`src/runtime/configuration/bem_app_config_particle_runtime.f90`	`bem_kinds`, `bem_constants`, `bem_types`, `bem_mpi`, `bem_electrostatic_snapshot`, `bem_collision`, `bem_injection`, `bem_external_boundary_contract`, `bem_app_config_types`, `bem_app_config_potential_runtime`, `bem_string_utils`, `bem_config_helpers`	app_config から粒子源計画と粒子バッチを構築する実行時変換。
`bem_app_config_potential_runtime`	`module`	`src/runtime/configuration/bem_app_config_potential_runtime.f90`	`bem_kinds`, `bem_constants`, `bem_types`, `bem_electrostatic_snapshot`, `bem_app_config_types`, `bem_string_utils`, `bem_config_helpers`	粒子注入面とbox基準面の電位統計を評価する実行時変換。
`bem_app_config_runtime`	`module`	`src/runtime/configuration/bem_app_config_runtime.f90`	`bem_app_config_mesh_runtime`, `bem_app_config_particle_runtime`, `bem_app_config_potential_runtime`	app_config のメッシュ・粒子・電位評価を束ねる後方互換ファサード。
`bem_app_config_particle_runtime_batch`	`submodule`	`src/runtime/configuration/bem_app_config_particle_runtime_batch.f90`	`bem_app_config_particle_runtime`, `bem_particles`	粒子源計画に従うMPI粒子数配分、サンプリング、バッチ組み立て。
`bem_app_config_particle_runtime_sampling`	`submodule`	`src/runtime/configuration/bem_app_config_particle_runtime_sampling.f90`	`bem_app_config_particle_runtime`	粒子種別のサンプリングと電位障壁に応じた注入速度の補正。
`bem_charge_ledger`	`module`	`src/runtime/coupling/bem_charge_ledger.f90`	`bem_kinds`	batch 間の signed charge stock と移送 flux から電荷収支を集計する。
`bem_matching_plane_coupling`	`module`	`src/runtime/sheath/bem_matching_plane_coupling.f90`	`bem_kinds`, `bem_constants`, `bem_types`, `bem_app_config`, `bem_string_utils`, `bem_charge_ledger`, `bem_electrostatic_snapshot`, `bem_surface_closure_contract`, `bem_matching_plane_response_provider`, `bem_matching_plane_zhao`, `bem_matching_plane_implicit`, `bem_mpi`	Matching-plane coupling state and batch lifecycle; particle replay is owned by the simulator.
`bem_matching_plane_implicit`	`module`	`src/runtime/sheath/bem_matching_plane_implicit.f90`	`bem_kinds`, `bem_matching_plane_response_provider`, `bem_matching_plane_zhao`, `bem_mpi`	Backward-Euler displacement solve for a matching-plane response, including continuation and MPI broadcast.
`bem_matching_plane_response_provider`	`module`	`src/runtime/sheath/bem_matching_plane_response_provider.f90`	`bem_kinds`, `bem_app_config_types`, `bem_matching_plane_response`, `bem_matching_plane_zhao`, `bem_mpi`	Matching-plane 応答の table / online Zhao backend を同じ契約で提供する。
`bem_surface_current_model`	`module`	`src/runtime/sheath/bem_surface_current_model.f90`	`bem_kinds`, `bem_constants`, `bem_app_config_types`, `bem_surface_closure_contract`, `bem_config_helpers`, `bem_sheath_model_core`, `bem_string_utils`	外部モデルから species 別の固定表面電流を解決する。
`bem_matching_plane_response_provider_mpi`	`submodule`	`src/runtime/sheath/bem_matching_plane_response_provider_mpi.f90`	`bem_matching_plane_response_provider`, `bem_constants`, `bem_config_helpers`, `bem_matching_plane_response`, `bem_mpi`, `bem_string_utils`	応答 provider の設定解決と MPI rank 間の合意・配信を担う。
`bem_matching_plane_response`	`module`	`src/runtime/sheath/table/bem_matching_plane_response.f90`	`bem_kinds`, `bem_mpi`, `bem_matching_plane_contract`	Matching-plane outer-sheath response table の immutable snapshot と補間。
`bem_matching_plane_response_io`	`submodule`	`src/runtime/sheath/table/bem_matching_plane_response_io.f90`	`bem_matching_plane_response`, `bem_string_utils`	CSV 応答テーブルの読み込み・格子検証を担う。
`bem_matching_plane_response_mpi`	`submodule`	`src/runtime/sheath/table/bem_matching_plane_response_mpi.f90`	`bem_matching_plane_response`, `bem_mpi`	root の応答テーブルを配信し、全 rank で同じ補間軸と値を使う。
`bem_particle_stepper`	`module`	`src/runtime/simulator/bem_particle_stepper.f90`	`bem_kinds`, `bem_types`, `bem_electrostatic_snapshot`, `bem_pusher`, `bem_collision`, `bem_boundary`, `bem_external_boundary_contract`	同一時刻の粒子状態から、空間電場を中点評価した1ステップ候補を構築する。
`bem_simulator`	`module`	`src/runtime/simulator/bem_simulator.f90`	`bem_kinds`, `bem_types`, `bem_app_config`, `bem_physics_config_types`, `bem_config_helpers`, `bem_app_config_runtime`, `bem_electrostatic_snapshot`, `bem_particle_stepper`, `bem_collision`, `bem_surface_models`, `bem_charge_ledger`, `bem_string_utils`, `bem_external_boundary_contract`, `bem_simulator_workspace`, `bem_surface_closure_contract`, `bem_surface_current_model`, `bem_output_writer`, `bem_mpi`	吸着(insulator)モデルのメインループを実行し、電荷堆積と統計更新を行う。
`bem_simulator_workspace`	`module`	`src/runtime/simulator/bem_simulator_workspace.f90`	`bem_kinds`	シミュレーション実行中に再利用するバッチ作業配列を管理する。
`bem_simulator_charge`	`submodule`	`src/runtime/simulator/bem_simulator_charge.f90`	`bem_simulator`, `bem_charge_ledger`	電荷差分の確定反映、表面電流補正、バッチ電荷台帳を実装する。
`bem_simulator_io`	`submodule`	`src/runtime/simulator/bem_simulator_io.f90`	`bem_simulator`, `bem_app_config_runtime`, `bem_output_writer`	`bem_simulator` の進捗表示と履歴出力を実装する submodule。
`bem_simulator_loop`	`submodule`	`src/runtime/simulator/bem_simulator_loop.f90`	`bem_simulator`, `bem_app_config_runtime`, `bem_matching_plane_coupling`, `bem_periodic_zero_mode_plan`, `bem_performance_profile`, `bem_mpi`, `bem_periodic_checkpoint`, `bem_charge_ledger`	`bem_simulator` の主ループと粒子処理計算を実装する submodule。
`bem_simulator_particles`	`submodule`	`src/runtime/simulator/bem_simulator_particles.f90`	`bem_simulator`	バッチ粒子の生成と追跡を実装する。連成反復と受理判定は主ループが管理する。
`bem_simulator_stats`	`submodule`	`src/runtime/simulator/bem_simulator_stats.f90`	`bem_simulator`	`bem_simulator` のバッチ集計・統計更新処理を実装する submodule。
`bem_matching_plane_query_io`	`module`	`src/tools/sheath/bem_matching_plane_query_io.f90`	`bem_kinds`, `bem_string_utils`	Offline Zhao ツール共通の数値 query CSV 入力。物理条件と格子条件は呼出側が扱う。
`bem_matching_plane_response_generator`	`module`	`src/tools/sheath/bem_matching_plane_response_generator.f90`	`bem_kinds`, `bem_app_config_types`, `bem_matching_plane_response`, `bem_matching_plane_response_provider`, `bem_filesystem`, `bem_mpi`, `bem_string_utils`, `bem_matching_plane_query_io`	Online Zhao evaluator から既存形式の matching-plane 応答表を生成する。
`bem_matching_plane_zhao_atlas`	`module`	`src/tools/sheath/bem_matching_plane_zhao_atlas.f90`	`bem_kinds`, `bem_app_config_types`, `bem_matching_plane_response`, `bem_matching_plane_response_provider`, `bem_matching_plane_zhao`, `bem_filesystem`, `bem_mpi`, `bem_string_utils`, `bem_matching_plane_query_io`	Zhao A/B/C branchのsolvabilityを独立評価するoffline atlas生成器。

Details

`main`

kind: program
path: app/main.f90
group: app
Internal dependencies: bem_kinds, bem_version, bem_types, bem_mpi, bem_performance_profile, bem_simulator, bem_restart, bem_periodic_checkpoint, bem_checkpoint_contract, bem_output_writer, bem_app_config, bem_mesh, bem_charge_ledger, bem_electrostatic_snapshot, bem_matching_plane_response_provider
external dependencies: iso_fortran_env
Source summary: 設定読込・メッシュ生成・粒子初期化・シミュレーション実行・結果出力を順に行うCLIエントリーポイント。

`zhao_atlas_main`

kind: program
path: app/zhao_atlas_main.f90
group: app
Internal dependencies: bem_kinds, bem_app_config, bem_matching_plane_zhao_atlas
external dependencies: none
Source summary: Zhao A/B/C solvability atlasを生成するCLI。

`zhao_response_main`

kind: program
path: app/zhao_response_main.f90
group: app
Internal dependencies: bem_kinds, bem_app_config, bem_matching_plane_response_generator
external dependencies: none
Source summary: Zhao online evaluatorからmatching-plane response tableを生成するCLI。

`bem_app_config_authoring`

kind: module
path: src/config/bem_app_config_authoring.f90
group: src/config
Internal dependencies: bem_kinds, bem_app_config_types, bem_app_config_authoring_types
external dependencies: none
Source summary: Authoring overlay の公開入口。配列管理と領域別変換の入口を持つ。

`bem_app_config_authoring_types`

kind: module
path: src/config/bem_app_config_authoring_types.f90
group: src/config
Internal dependencies: bem_kinds, bem_app_config_types
external dependencies: none
Source summary: TOML authoring overlay の型と default。実行時設定への変換処理は持たない。

`bem_app_config_types`

kind: module
path: src/config/bem_app_config_types.f90
group: src/config
Internal dependencies: bem_kinds, bem_types, bem_physics_config_types
external dependencies: none
Source summary: アプリ設定の型定義と、設定由来の粒子数計算をまとめるモジュール。

`bem_config_helpers`

kind: module
path: src/config/bem_config_helpers.f90
group: src/config
Internal dependencies: bem_kinds, bem_types, bem_app_config_types, bem_string_utils
external dependencies: none
Source summary: 設定型のヘルパー関数。パーサに依存せず下位層から利用可能。

`bem_config_toml`

kind: module
path: src/config/bem_config_toml.f90
group: src/config
Internal dependencies: bem_kinds, bem_types, bem_app_config_types, bem_string_utils
external dependencies: ieee_arithmetic, iso_fortran_env, tomlf
Source summary: TOML の基本型・固定長文字列・配列を検査して読み込む共通入口。

`bem_physics_config_types`

kind: module
path: src/config/bem_physics_config_types.f90
group: src/config
Internal dependencies: bem_kinds, bem_types, bem_string_utils
external dependencies: ieee_arithmetic
Source summary: 場・periodic2・panel の型付き設定と旧 [sim] 設定の正規化を定義する。

`bem_app_config_authoring_domain`

kind: submodule
path: src/config/bem_app_config_authoring_domain.f90
group: src/config
parent: bem_app_config_authoring
Internal dependencies: bem_app_config_authoring, bem_types, bem_string_utils
external dependencies: ieee_arithmetic
Source summary: 計算領域、境界、reservoir 設定の正規化と box の幾何条件。

`bem_app_config_authoring_geometry`

kind: submodule
path: src/config/bem_app_config_authoring_geometry.f90
group: src/config
parent: bem_app_config_authoring
Internal dependencies: bem_app_config_authoring, bem_string_utils
external dependencies: none
Source summary: Mesh template の group、anchor、相対サイズを実座標・実寸へ変換する。

`bem_app_config_authoring_sources`

kind: submodule
path: src/config/bem_app_config_authoring_sources.f90
group: src/config
parent: bem_app_config_authoring
Internal dependencies: bem_app_config_authoring, bem_string_utils
external dependencies: none
Source summary: 粒子源の face_fraction 入力を注入面上の実座標へ変換する。

`bem_app_config_parser`

kind: module
path: src/config/app_config_parser/bem_app_config_parser.f90
group: src/config/app_config_parser
Internal dependencies: bem_kinds, bem_types, bem_app_config_types, bem_physics_config_types, bem_app_config_authoring, bem_string_utils, bem_config_toml, bem_injection_flux, bem_injection_geometry
external dependencies: tomlf, ieee_arithmetic
Source summary: TOML設定ファイルを toml-f で読み込み、app_config へ反映する。

`bem_app_config_parser_finalize`

kind: submodule
path: src/config/app_config_parser/bem_app_config_parser_finalize.f90
group: src/config/app_config_parser
parent: bem_app_config_parser
Internal dependencies: bem_app_config_parser
external dependencies: none
Source summary: 設定の正規化と領域別 preflight の実行順を管理する。

`bem_app_config_parser_preflight_particles`

kind: submodule
path: src/config/app_config_parser/bem_app_config_parser_preflight_particles.f90
group: src/config/app_config_parser
parent: bem_app_config_parser
Internal dependencies: bem_app_config_parser, bem_app_config_types
external dependencies: none
Source summary: lint 済みの粒子種識別子と有効な粒子源の派生量を確定する。

`bem_app_config_parser_preflight_sim`

kind: submodule
path: src/config/app_config_parser/bem_app_config_parser_preflight_sim.f90
group: src/config/app_config_parser
parent: bem_app_config_parser
Internal dependencies: bem_app_config_parser
external dependencies: none
Source summary: lint 済み設定の基本的な計算条件を確認し、時間と外部場を確定する。

`bem_app_config_parser_preflight_surface`

kind: submodule
path: src/config/app_config_parser/bem_app_config_parser_preflight_surface.f90
group: src/config/app_config_parser
parent: bem_app_config_parser
Internal dependencies: bem_app_config_parser, bem_constants, bem_config_helpers, bem_app_config_types
external dependencies: none
Source summary: lint 済みの表面電流設定について、種の参照と物理モデルの成立条件を検査する。

`bem_app_config_parser_read_mesh`

kind: submodule
path: src/config/app_config_parser/bem_app_config_parser_read_mesh.f90
group: src/config/app_config_parser
parent: bem_app_config_parser
Internal dependencies: bem_app_config_parser
external dependencies: none
Source summary: メッシュの TOML 読み取りと、モード・表面モデルの preflight。

`bem_app_config_parser_read_particles`

kind: submodule
path: src/config/app_config_parser/bem_app_config_parser_read_particles.f90
group: src/config/app_config_parser
parent: bem_app_config_parser
Internal dependencies: bem_app_config_parser
external dependencies: none
Source summary: 領域別の TOML 読み取り。意味検証と派生値の確定は preflight が担当する。

`bem_app_config_parser_read_sim`

kind: submodule
path: src/config/app_config_parser/bem_app_config_parser_read_sim.f90
group: src/config/app_config_parser
parent: bem_app_config_parser
Internal dependencies: bem_app_config_parser
external dependencies: none
Source summary: 領域別の TOML 読み取り。意味検証と派生値の確定は preflight が担当する。

`bem_app_config_parser_read_surface`

kind: submodule
path: src/config/app_config_parser/bem_app_config_parser_read_surface.f90
group: src/config/app_config_parser
parent: bem_app_config_parser
Internal dependencies: bem_app_config_parser
external dependencies: none
Source summary: 領域別の TOML 読み取り。意味検証と派生値の確定は preflight が担当する。

`bem_app_config_parser_validate`

kind: submodule
path: src/config/app_config_parser/bem_app_config_parser_validate.f90
group: src/config/app_config_parser
parent: bem_app_config_parser
Internal dependencies: bem_app_config_parser, bem_config_helpers
external dependencies: none
Source summary: lint 済みの設定から電場・流束・粒子重みを導出し、計算結果を検査する。

`bem_constants`

kind: module
path: src/core/bem_constants.f90
group: src/core
Internal dependencies: bem_kinds
external dependencies: none
Source summary: シミュレーションで使用する物理定数を定義する。

`bem_external_boundary_contract`

kind: module
path: src/core/bem_external_boundary_contract.f90
group: src/core
Internal dependencies: bem_kinds, bem_string_utils
external dependencies: none
Source summary: 局所 reservoir 流入と通常 open 面の処理を実行時契約へ正規化する。

`bem_kinds`

kind: module
path: src/core/bem_kinds.f90
group: src/core
Internal dependencies: none
external dependencies: iso_fortran_env
Source summary: 倍精度実数と32bit整数のkind定義を集約する基盤モジュール。

`bem_mpi`

kind: module
path: src/core/bem_mpi.F90
group: src/core
Internal dependencies: bem_kinds
external dependencies: mpi
Source summary: MPIの初期化・集約を抽象化し、非MPIビルドでは単一ランク動作へフォールバックする。

`bem_string_utils`

kind: module
path: src/core/bem_string_utils.f90
group: src/core
Internal dependencies: none
external dependencies: none
Source summary: ASCII 文字列操作ユーティリティ。

`bem_types`

kind: module
path: src/core/bem_types.f90
group: src/core
Internal dependencies: bem_kinds
external dependencies: none
Source summary: シミュレーション設定・統計・メッシュ・粒子・衝突情報の主要データ型を定義する。

`bem_version`

kind: module
path: src/core/bem_version.F90
group: src/core
Internal dependencies: none
external dependencies: none
Source summary: BEACH build metadata stamped by build.sh.

`bem_importers`

kind: module
path: src/mesh/bem_importers.f90
group: src/mesh
Internal dependencies: bem_kinds, bem_types, bem_mesh
external dependencies: none
Source summary: OBJメッシュを走査・解析し、内部 mesh_type へ変換するインポートモジュール。

`bem_mesh`

kind: module
path: src/mesh/bem_mesh.f90
group: src/mesh
Internal dependencies: bem_kinds, bem_types, bem_string_utils, bem_panel_geometry, bem_triangle_quadrature
external dependencies: ieee_arithmetic
Source summary: 三角形メッシュ幾何量(重心・法線・AABB・代表長)を前計算して保持するモジュール。

`bem_templates`

kind: module
path: src/mesh/bem_templates.f90
group: src/mesh
Internal dependencies: bem_kinds, bem_types, bem_mesh
external dependencies: none
Source summary: 平面/穴あき平面/円板/リング/箱/円柱/球テンプレートから三角形メッシュを生成するユーティリティ。

`bem_panel_geometry`

kind: module
path: src/mesh/panel/bem_panel_geometry.f90
group: src/mesh/panel
Internal dependencies: bem_kinds
external dependencies: ieee_arithmetic
Source summary: Ordered triangle geometry and exact Cartesian surface moments.

`bem_panel_surface_sides`

kind: module
path: src/mesh/panel/bem_panel_surface_sides.f90
group: src/mesh/panel
Internal dependencies: bem_kinds, bem_types, bem_string_utils
external dependencies: none
Source summary: Resolve physical vacuum sides without changing ordered triangle winding.

`bem_triangle_quadrature`

kind: module
path: src/mesh/panel/bem_triangle_quadrature.f90
group: src/mesh/panel
Internal dependencies: bem_kinds, bem_constants, bem_panel_geometry
external dependencies: none
Source summary: Triangle cubature rules and Gauss-Duffy quadrature plans.

`bem_injection`

kind: module
path: src/particles/bem_injection.f90
group: src/particles
Internal dependencies: bem_injection_random, bem_injection_geometry, bem_injection_flux, bem_injection_velocity_grid, bem_photoelectron_injection
external dependencies: none
Source summary: 粒子注入APIを責務別internal moduleから再公開する互換facade。

`bem_particles`

kind: module
path: src/particles/bem_particles.f90
group: src/particles
Internal dependencies: bem_kinds, bem_types
external dependencies: none
Source summary: 粒子SoAデータ構造の初期化を提供するモジュール。

`bem_injection_flux`

kind: module
path: src/particles/injection/bem_injection_flux.f90
group: src/particles/injection
Internal dependencies: bem_kinds, bem_constants, bem_injection_geometry, bem_injection_random
external dependencies: ieee_arithmetic
Source summary: Maxwell reservoirの流束、macro粒子数、面速度sampling。

`bem_injection_geometry`

kind: module
path: src/particles/injection/bem_injection_geometry.f90
group: src/particles/injection
Internal dependencies: bem_kinds, bem_string_utils
external dependencies: none
Source summary: box面注入で共有する面軸と開口geometryの解決。

`bem_injection_random`

kind: module
path: src/particles/injection/bem_injection_random.f90
group: src/particles/injection
Internal dependencies: bem_kinds, bem_constants, bem_particles, bem_types
external dependencies: none
Source summary: 粒子注入で共有する乱数初期化と基本分布sampling。

`bem_injection_velocity_grid`

kind: module
path: src/particles/injection/bem_injection_velocity_grid.f90
group: src/particles/injection
Internal dependencies: bem_kinds, bem_string_utils, bem_injection_geometry
external dependencies: ieee_arithmetic
Source summary: CSV速度grid reservoirの読込、補間、sampling。

`bem_photoelectron_injection`

kind: module
path: src/particles/injection/bem_photoelectron_injection.f90
group: src/particles/injection
Internal dependencies: bem_kinds, bem_constants, bem_types, bem_boundary, bem_collision, bem_string_utils, bem_injection_flux, bem_injection_geometry, bem_injection_random
external dependencies: iso_fortran_env
Source summary: 光線追跡による光電子放出位置と速度のsampling。

`bem_boundary`

kind: module
path: src/physics/bem_boundary.f90
group: src/physics
Internal dependencies: bem_kinds, bem_types
external dependencies: ieee_arithmetic
Source summary: シミュレーションボックス境界（流出/反射/面内再配置反射/周期）を適用するモジュール。

`bem_collision`

kind: module
path: src/physics/bem_collision.f90
group: src/physics
Internal dependencies: bem_kinds, bem_types, bem_string_utils
external dependencies: ieee_arithmetic, iso_fortran_env
Source summary: 粒子軌道セグメントと三角形要素の交差判定を提供する衝突検出モジュール。

`bem_pusher`

kind: module
path: src/physics/bem_pusher.f90
group: src/physics
Internal dependencies: bem_kinds
external dependencies: none
Source summary: 荷電粒子の時間発展にBoris法を適用する運動方程式ソルバ。

`bem_surface_models`

kind: module
path: src/physics/bem_surface_models.f90
group: src/physics
Internal dependencies: bem_kinds, bem_types, bem_string_utils
external dependencies: none
Source summary: 表面モデルごとの電荷更新後処理を扱うモジュール。

`bem_surface_models_conductor`

kind: submodule
path: src/physics/bem_surface_models_conductor.f90
group: src/physics
parent: bem_surface_models
Internal dependencies: bem_surface_models, bem_constants, bem_panel_geometry, bem_panel_kernel
external dependencies: none
Source summary: bem_surface_models の浮遊導体電荷再配分を実装する submodule。

`bem_electrostatic_snapshot`

kind: module
path: src/physics/field_solver/bem_electrostatic_snapshot.f90
group: src/physics/field_solver
Internal dependencies: bem_kinds, bem_constants, bem_types, bem_field_solver, bem_physics_config_types, bem_string_utils, bem_periodic_zero_mode_plan, bem_periodic_zero_mode_eval, bem_coulomb_fmm_periodic_nonzero_reference, bem_coulomb_fmm_periodic_nonzero_upper_vacuum, bem_panel_geometry, bem_panel_kernel
external dependencies: ieee_arithmetic
Source summary: 1バッチ内で固定する静電場 snapshot。

`bem_field_kernel_c`

kind: module
path: src/physics/field_solver/bem_field_kernel_c.f90
group: src/physics/field_solver
Internal dependencies: bem_constants, bem_coulomb_fmm_core, bem_kinds, bem_panel_geometry, bem_version
external dependencies: ieee_arithmetic, iso_c_binding
Source summary: C ABI wrapper for the simulator-independent Coulomb FMM field kernel.

`bem_field_solver`

kind: module
path: src/physics/field_solver/bem_field_solver.f90
group: src/physics/field_solver
Internal dependencies: bem_kinds, bem_constants, bem_types, bem_coulomb_fmm_core, bem_string_utils, bem_physics_config_types
external dependencies: ieee_arithmetic
Source summary: 粒子位置での電場評価を direct / treecode / fmm で切り替える場ソルバ。

`bem_electrostatic_snapshot_eval`

kind: submodule
path: src/physics/field_solver/bem_electrostatic_snapshot_eval.f90
group: src/physics/field_solver
parent: bem_electrostatic_snapshot
Internal dependencies: bem_electrostatic_snapshot, bem_coulomb_fmm_periodic_nonzero_upper_vacuum
external dependencies: none
Source summary: bem_electrostatic_snapshot の局所電場・電位評価を実装する submodule。

`bem_field_solver_config`

kind: submodule
path: src/physics/field_solver/bem_field_solver_config.f90
group: src/physics/field_solver
parent: bem_field_solver
Internal dependencies: bem_field_solver, bem_coulomb_fmm_core, bem_physics_config_types
external dependencies: none
Source summary: bem_field_solver の初期化・設定補助手続きを実装する submodule。

`bem_field_solver_eval`

kind: submodule
path: src/physics/field_solver/bem_field_solver_eval.f90
group: src/physics/field_solver
parent: bem_field_solver
Internal dependencies: bem_field_solver, bem_coulomb_fmm_core, bem_panel_geometry, bem_panel_kernel
external dependencies: none
Source summary: bem_field_solver の電場評価と木走査ロジックを実装する submodule。

`bem_field_solver_fmm`

kind: submodule
path: src/physics/field_solver/bem_field_solver_fmm.f90
group: src/physics/field_solver
parent: bem_field_solver
Internal dependencies: bem_field_solver, bem_coulomb_fmm_core
external dependencies: none
Source summary: bem_field_solver と FMM core の間のパネル幾何・電荷状態の更新を担う。

`bem_field_solver_tree`

kind: submodule
path: src/physics/field_solver/bem_field_solver_tree.f90
group: src/physics/field_solver
parent: bem_field_solver
Internal dependencies: bem_field_solver
external dependencies: none
Source summary: bem_field_solver の octree 構築・更新とメモリ管理を実装する submodule。

`bem_coulomb_fmm_core`

kind: module
path: src/physics/field_solver/fmm/api/bem_coulomb_fmm_core.f90
group: src/physics/field_solver/fmm/api
Internal dependencies: bem_kinds, bem_coulomb_fmm_types
external dependencies: none
Source summary: mesh_type や sim_config に依存しない Coulomb FMM コア API。

`bem_coulomb_fmm_core_build`

kind: submodule
path: src/physics/field_solver/fmm/api/bem_coulomb_fmm_core_build.f90
group: src/physics/field_solver/fmm/api
parent: bem_coulomb_fmm_core
Internal dependencies: bem_coulomb_fmm_core, bem_coulomb_fmm_plan_ops
external dependencies: none
Source summary: bem_coulomb_fmm_core の plan 構築 API ラッパ。

`bem_coulomb_fmm_core_eval`

kind: submodule
path: src/physics/field_solver/fmm/api/bem_coulomb_fmm_core_eval.f90
group: src/physics/field_solver/fmm/api
parent: bem_coulomb_fmm_core
Internal dependencies: bem_coulomb_fmm_core, bem_coulomb_fmm_eval_ops
external dependencies: none
Source summary: bem_coulomb_fmm_core の評価 API ラッパ。

`bem_coulomb_fmm_core_state`

kind: submodule
path: src/physics/field_solver/fmm/api/bem_coulomb_fmm_core_state.f90
group: src/physics/field_solver/fmm/api
parent: bem_coulomb_fmm_core
Internal dependencies: bem_coulomb_fmm_core, bem_coulomb_fmm_state_ops
external dependencies: none
Source summary: bem_coulomb_fmm_core の state 更新 API ラッパ。

`bem_coulomb_fmm_basis`

kind: module
path: src/physics/field_solver/fmm/internal/common/bem_coulomb_fmm_basis.f90
group: src/physics/field_solver/fmm/internal/common
Internal dependencies: bem_kinds, bem_coulomb_fmm_types
external dependencies: none
Source summary: Coulomb FMM の multi-index と微分テーブル計算。

`bem_coulomb_fmm_types`

kind: module
path: src/physics/field_solver/fmm/internal/common/bem_coulomb_fmm_types.f90
group: src/physics/field_solver/fmm/internal/common
Internal dependencies: bem_kinds, bem_panel_geometry, bem_periodic_zero_mode_plan
external dependencies: none
Source summary: Coulomb FMM コアで共有する型定義。

`bem_coulomb_fmm_periodic`

kind: module
path: src/physics/field_solver/fmm/internal/periodic/bem_coulomb_fmm_periodic.f90
group: src/physics/field_solver/fmm/internal/periodic
Internal dependencies: bem_kinds, bem_coulomb_fmm_types
external dependencies: none
Source summary: Coulomb FMM の periodic2 境界処理。

`bem_coulomb_fmm_periodic_cache`

kind: module
path: src/physics/field_solver/fmm/internal/periodic/bem_coulomb_fmm_periodic_cache.f90
group: src/physics/field_solver/fmm/internal/periodic
Internal dependencies: bem_filesystem, bem_kinds
external dependencies: iso_fortran_env
Source summary: Versioned stream codec for cached periodic root operators.

`bem_coulomb_fmm_periodic_ewald`

kind: module
path: src/physics/field_solver/fmm/internal/periodic/bem_coulomb_fmm_periodic_ewald.f90
group: src/physics/field_solver/fmm/internal/periodic
Internal dependencies: bem_kinds, bem_coulomb_fmm_types, bem_coulomb_fmm_periodic
external dependencies: none
Source summary: periodic2 cached operator生成用のEwald teacher。

`bem_coulomb_fmm_periodic_root_ops`

kind: module
path: src/physics/field_solver/fmm/internal/periodic/bem_coulomb_fmm_periodic_root_ops.f90
group: src/physics/field_solver/fmm/internal/periodic
Internal dependencies: bem_version, bem_kinds, bem_mpi, bem_filesystem, bem_coulomb_fmm_types, bem_coulomb_fmm_basis, bem_coulomb_fmm_periodic, bem_coulomb_fmm_periodic_ewald, bem_coulomb_fmm_periodic_cache, bem_regularized_qr, bem_coulomb_fmm_tree_utils
external dependencies: none
Source summary: periodic2 root operator の前計算。

`bem_regularized_qr`

kind: module
path: src/physics/field_solver/fmm/internal/periodic/bem_regularized_qr.f90
group: src/physics/field_solver/fmm/internal/periodic
Internal dependencies: bem_kinds
external dependencies: none
Source summary: Reusable column-scaled QR factorization for ridge-regularized least squares.

`bem_coulomb_fmm_eval_ops`

kind: module
path: src/physics/field_solver/fmm/internal/runtime/bem_coulomb_fmm_eval_ops.f90
group: src/physics/field_solver/fmm/internal/runtime
Internal dependencies: bem_kinds, bem_constants, bem_panel_geometry, bem_panel_kernel, bem_coulomb_fmm_types, bem_coulomb_fmm_basis, bem_coulomb_fmm_periodic, bem_coulomb_fmm_tree_utils, bem_periodic_zero_mode_eval
external dependencies: none
Source summary: Coulomb FMM 電場評価。

`bem_coulomb_fmm_state_ops`

kind: module
path: src/physics/field_solver/fmm/internal/runtime/bem_coulomb_fmm_state_ops.f90
group: src/physics/field_solver/fmm/internal/runtime
Internal dependencies: bem_kinds, bem_constants, bem_coulomb_fmm_types, bem_coulomb_fmm_tree_utils, bem_periodic_zero_mode_plan
external dependencies: none
Source summary: Coulomb FMM state 更新と upward/downward pass。

`bem_coulomb_fmm_plan_ops`

kind: module
path: src/physics/field_solver/fmm/internal/tree/bem_coulomb_fmm_plan_ops.f90
group: src/physics/field_solver/fmm/internal/tree
Internal dependencies: bem_kinds, bem_coulomb_fmm_types, bem_coulomb_fmm_basis, bem_coulomb_fmm_periodic, bem_coulomb_fmm_periodic_ewald, bem_coulomb_fmm_periodic_root_ops, bem_panel_geometry, bem_periodic_zero_mode_plan, bem_coulomb_fmm_tree_utils
external dependencies: none
Source summary: Coulomb FMM plan 構築と tree トポロジ前計算。

`bem_coulomb_fmm_tree_utils`

kind: module
path: src/physics/field_solver/fmm/internal/tree/bem_coulomb_fmm_tree_utils.f90
group: src/physics/field_solver/fmm/internal/tree
Internal dependencies: bem_kinds, bem_coulomb_fmm_types, bem_coulomb_fmm_periodic
external dependencies: none
Source summary: Coulomb FMM tree 構造の共通ユーティリティ。

`bem_panel_kernel`

kind: module
path: src/physics/field_solver/panel/bem_panel_kernel.f90
group: src/physics/field_solver/panel
Internal dependencies: bem_kinds, bem_constants, bem_panel_geometry, bem_panel_self_terms
external dependencies: none
Source summary: Analytic free-space P0 triangle potential, field, principal value, and jump.

`bem_panel_quadrature`

kind: module
path: src/physics/field_solver/panel/bem_panel_quadrature.f90
group: src/physics/field_solver/panel
Internal dependencies: bem_kinds, bem_constants, bem_panel_geometry, bem_triangle_quadrature
external dependencies: none
Source summary: Independent Coulomb potential/field correctness oracles for triangle panels.

`bem_panel_self_terms`

kind: module
path: src/physics/field_solver/panel/bem_panel_self_terms.f90
group: src/physics/field_solver/panel
Internal dependencies: bem_kinds, bem_panel_geometry
external dependencies: none
Source summary: On-surface P0 triangle potential and principal-value field integrals.

`bem_coulomb_fmm_periodic_nonzero_reference`

kind: module
path: src/physics/field_solver/periodic/bem_coulomb_fmm_periodic_nonzero_reference.f90
group: src/physics/field_solver/periodic
Internal dependencies: bem_kinds, bem_constants, bem_types, bem_panel_geometry, bem_triangle_quadrature
external dependencies: ieee_arithmetic

`bem_coulomb_fmm_periodic_nonzero_upper_vacuum`

kind: module
path: src/physics/field_solver/periodic/bem_coulomb_fmm_periodic_nonzero_upper_vacuum.f90
group: src/physics/field_solver/periodic
Internal dependencies: bem_kinds, bem_constants, bem_types
external dependencies: ieee_arithmetic
Source summary: 上部真空領域で周期 k/=0 panel Fourier 和をsource/target因子へ分離する。

`bem_periodic_zero_mode_c`

kind: module
path: src/physics/field_solver/periodic/bem_periodic_zero_mode_c.f90
group: src/physics/field_solver/periodic
Internal dependencies: bem_kinds, bem_periodic_zero_mode_eval, bem_periodic_zero_mode_plan
external dependencies: ieee_arithmetic, iso_c_binding
Source summary: C ABI wrapper for the physical periodic zero mode.

`bem_periodic_zero_mode_eval`

kind: module
path: src/physics/field_solver/periodic/bem_periodic_zero_mode_eval.f90
group: src/physics/field_solver/periodic
Internal dependencies: bem_kinds, bem_constants, bem_periodic_zero_mode_plan
external dependencies: none

`bem_periodic_zero_mode_plan`

kind: module
path: src/physics/field_solver/periodic/bem_periodic_zero_mode_plan.f90
group: src/physics/field_solver/periodic
Internal dependencies: bem_kinds, bem_constants, bem_types
external dependencies: ieee_arithmetic

`bem_matching_plane_contract`

kind: module
path: src/physics/sheath/bem_matching_plane_contract.f90
group: src/physics/sheath
Internal dependencies: bem_kinds
external dependencies: none
Source summary: Matching-plane 応答の 5 入力・6 出力の並び。モデル、CSV、MPI の実装には依存しない。

`bem_surface_closure_contract`

kind: module
path: src/physics/sheath/bem_surface_closure_contract.f90
group: src/physics/sheath
Internal dependencies: bem_kinds
external dependencies: none
Source summary: シミュレータが外部の表面電流モデルから受け取るモデル非依存の境界契約。

`bem_matching_plane_zhao`

kind: module
path: src/physics/sheath/zhao/bem_matching_plane_zhao.f90
group: src/physics/sheath/zhao
Internal dependencies: bem_kinds, bem_constants, bem_matching_plane_contract, bem_sheath_model_core, bem_string_utils
external dependencies: ieee_arithmetic

`bem_sheath_model_core`

kind: module
path: src/physics/sheath/zhao/bem_sheath_model_core.f90
group: src/physics/sheath/zhao
Internal dependencies: bem_kinds, bem_constants
external dependencies: ieee_arithmetic
Source summary: Zhao 系シース数値モデルの core 実装。

`bem_matching_plane_zhao_numerics`

kind: submodule
path: src/physics/sheath/zhao/bem_matching_plane_zhao_numerics.f90
group: src/physics/sheath/zhao
parent: bem_matching_plane_zhao
Internal dependencies: bem_matching_plane_zhao
external dependencies: none

`bem_matching_plane_zhao_physics`

kind: submodule
path: src/physics/sheath/zhao/bem_matching_plane_zhao_physics.f90
group: src/physics/sheath/zhao
parent: bem_matching_plane_zhao
Internal dependencies: bem_matching_plane_zhao, bem_sheath_model_core
external dependencies: none

`bem_matching_plane_zhao_roots`

kind: submodule
path: src/physics/sheath/zhao/bem_matching_plane_zhao_roots.f90
group: src/physics/sheath/zhao
parent: bem_matching_plane_zhao
Internal dependencies: bem_matching_plane_zhao
external dependencies: none

`bem_checkpoint_contract`

kind: module
path: src/runtime/bem_checkpoint_contract.f90
group: src/runtime
Internal dependencies: bem_kinds, bem_filesystem
external dependencies: none
Source summary: BEACH checkpoint metadata and transactional publication shared by output and restart code.

`bem_filesystem`

kind: module
path: src/runtime/bem_filesystem.f90
group: src/runtime
Internal dependencies: none
external dependencies: iso_c_binding
Source summary: Minimal POSIX filesystem operations used by the runtime.

`bem_mesh_identity`

kind: module
path: src/runtime/bem_mesh_identity.f90
group: src/runtime
Internal dependencies: bem_kinds, bem_types
external dependencies: none
Source summary: Ordered mesh identity for mapping saved element charges.

`bem_output_writer`

kind: module
path: src/runtime/bem_output_writer.f90
group: src/runtime
Internal dependencies: bem_kinds, bem_types, bem_app_config_types, bem_charge_ledger, bem_checkpoint_contract, bem_electrostatic_snapshot, bem_filesystem
external dependencies: none
Source summary: 実行サマリ・最終CSV・履歴CSVの出力を担当するモジュール。

`bem_performance_profile`

kind: module
path: src/runtime/bem_performance_profile.f90
group: src/runtime
Internal dependencies: bem_kinds, bem_mpi, bem_string_utils
external dependencies: iso_fortran_env
Source summary: 実行フェーズごとの壁時計計測と MPI 集約出力を担う軽量プロファイラ。

`bem_periodic_checkpoint`

kind: module
path: src/runtime/bem_periodic_checkpoint.f90
group: src/runtime
Internal dependencies: bem_kinds, bem_types, bem_app_config_types, bem_charge_ledger, bem_checkpoint_contract, bem_filesystem, bem_mpi, bem_output_writer, bem_restart
external dependencies: none
Source summary: accepted batch 境界で二重化した定期チェックポイントを保存・解決する。

`bem_restart`

kind: module
path: src/runtime/bem_restart.f90
group: src/runtime
Internal dependencies: bem_kinds, bem_types, bem_app_config_types, bem_charge_ledger, bem_checkpoint_contract, bem_mpi
external dependencies: ieee_arithmetic
Source summary: チェックポイントファイルの保存/復元を扱う補助モジュール。

`integer`

kind: module
path: src/runtime/bem_output_writer.f90
group: src/runtime
Internal dependencies: bem_kinds, bem_types, bem_app_config_types, bem_charge_ledger, bem_checkpoint_contract, bem_electrostatic_snapshot, bem_filesystem
external dependencies: none

`pure`

kind: module
path: src/runtime/bem_output_writer.f90
group: src/runtime
Internal dependencies: bem_kinds, bem_types, bem_app_config_types, bem_charge_ledger, bem_checkpoint_contract, bem_electrostatic_snapshot, bem_filesystem
external dependencies: none

`bem_output_writer_files`

kind: submodule
path: src/runtime/bem_output_writer_files.f90
group: src/runtime
parent: bem_output_writer
Internal dependencies: bem_output_writer, bem_types, bem_string_utils
external dependencies: none
Source summary: メッシュ・電荷・電位・台帳のCSV出力。

`bem_output_writer_history`

kind: submodule
path: src/runtime/bem_output_writer_history.f90
group: src/runtime
parent: bem_output_writer
Internal dependencies: bem_output_writer, bem_string_utils
external dependencies: none
Source summary: 履歴ファイルの生成・再開とスナップショットの出力。

`bem_output_writer_summary`

kind: submodule
path: src/runtime/bem_output_writer_summary.f90
group: src/runtime
parent: bem_output_writer
Internal dependencies: bem_output_writer, bem_types, bem_charge_ledger, bem_checkpoint_contract, bem_field_solver, bem_external_boundary_contract, bem_mesh_identity, bem_physics_config_types, bem_surface_current_model, bem_version, bem_string_utils
external dependencies: none
Source summary: 実行サマリと再構築用メタデータの出力。

`bem_restart_contract`

kind: submodule
path: src/runtime/bem_restart_contract.f90
group: src/runtime
parent: bem_restart
Internal dependencies: bem_restart, bem_mesh_identity, bem_physics_config_types, bem_checkpoint_contract
external dependencies: none
Source summary: 再開時のスキーマ・メッシュ整合性の検証。

`bem_restart_injection`

kind: submodule
path: src/runtime/bem_restart_injection.f90
group: src/runtime
parent: bem_restart
Internal dependencies: bem_restart, bem_kinds, bem_mpi
external dependencies: none
Source summary: 再開に必要な乱数状態・マクロ粒子端数の保存と復元。

`bem_restart_records`

kind: submodule
path: src/runtime/bem_restart_records.f90
group: src/runtime
parent: bem_restart
Internal dependencies: bem_restart, bem_kinds, bem_string_utils
external dependencies: none
Source summary: チェックポイントの統計・電荷・台帳の読み込みと形式検証。

`bem_app_config`

kind: module
path: src/runtime/configuration/bem_app_config.f90
group: src/runtime/configuration
Internal dependencies: bem_app_config_types, bem_physics_config_types, bem_app_config_parser, bem_string_utils, bem_app_config_runtime
external dependencies: none
Source summary: 設定型・TOMLパーサ・実行時変換ロジックを束ねる後方互換ファサード。

`bem_app_config_mesh_runtime`

kind: module
path: src/runtime/configuration/bem_app_config_mesh_runtime.f90
group: src/runtime/configuration
Internal dependencies: bem_kinds, bem_types, bem_templates, bem_mesh, bem_panel_surface_sides, bem_importers, bem_app_config_types, bem_string_utils
external dependencies: ieee_arithmetic
Source summary: app_config から三角形メッシュを構築する実行時変換。

`bem_app_config_particle_runtime`

kind: module
path: src/runtime/configuration/bem_app_config_particle_runtime.f90
group: src/runtime/configuration
Internal dependencies: bem_kinds, bem_constants, bem_types, bem_mpi, bem_electrostatic_snapshot, bem_collision, bem_injection, bem_external_boundary_contract, bem_app_config_types, bem_app_config_potential_runtime, bem_string_utils, bem_config_helpers
external dependencies: iso_fortran_env, ieee_arithmetic
Source summary: app_config から粒子源計画と粒子バッチを構築する実行時変換。

`bem_app_config_potential_runtime`

kind: module
path: src/runtime/configuration/bem_app_config_potential_runtime.f90
group: src/runtime/configuration
Internal dependencies: bem_kinds, bem_constants, bem_types, bem_electrostatic_snapshot, bem_app_config_types, bem_string_utils, bem_config_helpers
external dependencies: iso_fortran_env, ieee_arithmetic
Source summary: 粒子注入面とbox基準面の電位統計を評価する実行時変換。

`bem_app_config_runtime`

kind: module
path: src/runtime/configuration/bem_app_config_runtime.f90
group: src/runtime/configuration
Internal dependencies: bem_app_config_mesh_runtime, bem_app_config_particle_runtime, bem_app_config_potential_runtime
external dependencies: none
Source summary: app_config のメッシュ・粒子・電位評価を束ねる後方互換ファサード。

`bem_app_config_particle_runtime_batch`

kind: submodule
path: src/runtime/configuration/bem_app_config_particle_runtime_batch.f90
group: src/runtime/configuration
parent: bem_app_config_particle_runtime
Internal dependencies: bem_app_config_particle_runtime, bem_particles
external dependencies: none
Source summary: 粒子源計画に従うMPI粒子数配分、サンプリング、バッチ組み立て。

`bem_app_config_particle_runtime_sampling`

kind: submodule
path: src/runtime/configuration/bem_app_config_particle_runtime_sampling.f90
group: src/runtime/configuration
parent: bem_app_config_particle_runtime
Internal dependencies: bem_app_config_particle_runtime
external dependencies: none
Source summary: 粒子種別のサンプリングと電位障壁に応じた注入速度の補正。

`bem_charge_ledger`

kind: module
path: src/runtime/coupling/bem_charge_ledger.f90
group: src/runtime/coupling
Internal dependencies: bem_kinds
external dependencies: ieee_arithmetic
Source summary: batch 間の signed charge stock と移送 flux から電荷収支を集計する。

`bem_matching_plane_coupling`

kind: module
path: src/runtime/sheath/bem_matching_plane_coupling.f90
group: src/runtime/sheath
Internal dependencies: bem_kinds, bem_constants, bem_types, bem_app_config, bem_string_utils, bem_charge_ledger, bem_electrostatic_snapshot, bem_surface_closure_contract, bem_matching_plane_response_provider, bem_matching_plane_zhao, bem_matching_plane_implicit, bem_mpi
external dependencies: iso_fortran_env, ieee_arithmetic
Source summary: Matching-plane coupling state and batch lifecycle; particle replay is owned by the simulator.

`bem_matching_plane_implicit`

kind: module
path: src/runtime/sheath/bem_matching_plane_implicit.f90
group: src/runtime/sheath
Internal dependencies: bem_kinds, bem_matching_plane_response_provider, bem_matching_plane_zhao, bem_mpi
external dependencies: iso_fortran_env, ieee_arithmetic
Source summary: Backward-Euler displacement solve for a matching-plane response, including continuation and MPI broadcast.

`bem_matching_plane_response_provider`

kind: module
path: src/runtime/sheath/bem_matching_plane_response_provider.f90
group: src/runtime/sheath
Internal dependencies: bem_kinds, bem_app_config_types, bem_matching_plane_response, bem_matching_plane_zhao, bem_mpi
external dependencies: ieee_arithmetic
Source summary: Matching-plane 応答の table / online Zhao backend を同じ契約で提供する。

`bem_surface_current_model`

kind: module
path: src/runtime/sheath/bem_surface_current_model.f90
group: src/runtime/sheath
Internal dependencies: bem_kinds, bem_constants, bem_app_config_types, bem_surface_closure_contract, bem_config_helpers, bem_sheath_model_core, bem_string_utils
external dependencies: ieee_arithmetic
Source summary: 外部モデルから species 別の固定表面電流を解決する。

`bem_matching_plane_response_provider_mpi`

kind: submodule
path: src/runtime/sheath/bem_matching_plane_response_provider_mpi.f90
group: src/runtime/sheath
parent: bem_matching_plane_response_provider
Internal dependencies: bem_matching_plane_response_provider, bem_constants, bem_config_helpers, bem_matching_plane_response, bem_mpi, bem_string_utils
external dependencies: none
Source summary: 応答 provider の設定解決と MPI rank 間の合意・配信を担う。

`bem_matching_plane_response`

kind: module
path: src/runtime/sheath/table/bem_matching_plane_response.f90
group: src/runtime/sheath/table
Internal dependencies: bem_kinds, bem_mpi, bem_matching_plane_contract
external dependencies: ieee_arithmetic
Source summary: Matching-plane outer-sheath response table の immutable snapshot と補間。

`bem_matching_plane_response_io`

kind: submodule
path: src/runtime/sheath/table/bem_matching_plane_response_io.f90
group: src/runtime/sheath/table
parent: bem_matching_plane_response
Internal dependencies: bem_matching_plane_response, bem_string_utils
external dependencies: none
Source summary: CSV 応答テーブルの読み込み・格子検証を担う。

`bem_matching_plane_response_mpi`

kind: submodule
path: src/runtime/sheath/table/bem_matching_plane_response_mpi.f90
group: src/runtime/sheath/table
parent: bem_matching_plane_response
Internal dependencies: bem_matching_plane_response, bem_mpi
external dependencies: none
Source summary: root の応答テーブルを配信し、全 rank で同じ補間軸と値を使う。

`bem_particle_stepper`

kind: module
path: src/runtime/simulator/bem_particle_stepper.f90
group: src/runtime/simulator
Internal dependencies: bem_kinds, bem_types, bem_electrostatic_snapshot, bem_pusher, bem_collision, bem_boundary, bem_external_boundary_contract
external dependencies: ieee_arithmetic
Source summary: 同一時刻の粒子状態から、空間電場を中点評価した1ステップ候補を構築する。

`bem_simulator`

kind: module
path: src/runtime/simulator/bem_simulator.f90
group: src/runtime/simulator
Internal dependencies: bem_kinds, bem_types, bem_app_config, bem_physics_config_types, bem_config_helpers, bem_app_config_runtime, bem_electrostatic_snapshot, bem_particle_stepper, bem_collision, bem_surface_models, bem_charge_ledger, bem_string_utils, bem_external_boundary_contract, bem_simulator_workspace, bem_surface_closure_contract, bem_surface_current_model, bem_output_writer, bem_mpi
external dependencies: iso_fortran_env, ieee_arithmetic
Source summary: 吸着(insulator)モデルのメインループを実行し、電荷堆積と統計更新を行う。

`bem_simulator_workspace`

kind: module
path: src/runtime/simulator/bem_simulator_workspace.f90
group: src/runtime/simulator
Internal dependencies: bem_kinds
external dependencies: none
Source summary: シミュレーション実行中に再利用するバッチ作業配列を管理する。

`bem_simulator_charge`

kind: submodule
path: src/runtime/simulator/bem_simulator_charge.f90
group: src/runtime/simulator
parent: bem_simulator
Internal dependencies: bem_simulator, bem_charge_ledger
external dependencies: iso_fortran_env
Source summary: 電荷差分の確定反映、表面電流補正、バッチ電荷台帳を実装する。

`bem_simulator_io`

kind: submodule
path: src/runtime/simulator/bem_simulator_io.f90
group: src/runtime/simulator
parent: bem_simulator
Internal dependencies: bem_simulator, bem_app_config_runtime, bem_output_writer
external dependencies: none
Source summary: bem_simulator の進捗表示と履歴出力を実装する submodule。

`bem_simulator_loop`

kind: submodule
path: src/runtime/simulator/bem_simulator_loop.f90
group: src/runtime/simulator
parent: bem_simulator
Internal dependencies: bem_simulator, bem_app_config_runtime, bem_matching_plane_coupling, bem_periodic_zero_mode_plan, bem_performance_profile, bem_mpi, bem_periodic_checkpoint, bem_charge_ledger
external dependencies: iso_fortran_env
Source summary: bem_simulator の主ループと粒子処理計算を実装する submodule。

`bem_simulator_particles`

kind: submodule
path: src/runtime/simulator/bem_simulator_particles.f90
group: src/runtime/simulator
parent: bem_simulator
Internal dependencies: bem_simulator
external dependencies: none
Source summary: バッチ粒子の生成と追跡を実装する。連成反復と受理判定は主ループが管理する。

`bem_simulator_stats`

kind: submodule
path: src/runtime/simulator/bem_simulator_stats.f90
group: src/runtime/simulator
parent: bem_simulator
Internal dependencies: bem_simulator
external dependencies: none
Source summary: bem_simulator のバッチ集計・統計更新処理を実装する submodule。

`bem_matching_plane_query_io`

kind: module
path: src/tools/sheath/bem_matching_plane_query_io.f90
group: src/tools/sheath
Internal dependencies: bem_kinds, bem_string_utils
external dependencies: ieee_arithmetic
Source summary: Offline Zhao ツール共通の数値 query CSV 入力。物理条件と格子条件は呼出側が扱う。

`bem_matching_plane_response_generator`

kind: module
path: src/tools/sheath/bem_matching_plane_response_generator.f90
group: src/tools/sheath
Internal dependencies: bem_kinds, bem_app_config_types, bem_matching_plane_response, bem_matching_plane_response_provider, bem_filesystem, bem_mpi, bem_string_utils, bem_matching_plane_query_io
external dependencies: none
Source summary: Online Zhao evaluator から既存形式の matching-plane 応答表を生成する。

`bem_matching_plane_zhao_atlas`

kind: module
path: src/tools/sheath/bem_matching_plane_zhao_atlas.f90
group: src/tools/sheath
Internal dependencies: bem_kinds, bem_app_config_types, bem_matching_plane_response, bem_matching_plane_response_provider, bem_matching_plane_zhao, bem_filesystem, bem_mpi, bem_string_utils, bem_matching_plane_query_io
external dependencies: ieee_arithmetic
Source summary: Zhao A/B/C branchのsolvabilityを独立評価するoffline atlas生成器。